Schedule

September 10, 2001
Presenter: Tom Blackwell
Article: Dirk Holste, et. al. "Statistical analysis of the DNA sequence of human chromosome 22." Physical Review vol. 64 (2001): 0291XX-1 - 0291XX9)

September 17, 2001
Presenter: Rich McEachin
Article: Ian Korf, et. al. "Integrating genomic homology into gene structure prediction." Bioinformatics vol. 17 (2001): S140-S148

September 24, 2001
Presenter: Ron Liu
Article: Michael J. Stanhope, et. al. "Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates." Nature vol. 411 (21 June 2001): 940-944

October 1, 2001
Presenter: Tom Blackwell
Article: Jason D. Lieb, et. al. "Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association." Nature Genetics vol. 28 (August 2001): 327-334

October 8, 2001
Presenter: Stewart Chang
Article: Stuart K. Kim, et. al. "A Gene Expression Map of Caenorhabditis elegans." Science vol. 293 (14 September 2001): 2087-2092

October 15, 2001 - CANCELLED (Exams)

October 22, 2001
Presenter: Dr. David States
Article: Fabian Model, et. al. "Feature selection for DNA methylation based cancer classification." Bioinformatics vol. 17 (2001): S157-S164

October 29, 2001
Presenter: Carlos Santos
Article: Zemin Ning, et. al. "SSAHA: A Fast Search Method for Large DNA Databases." Genome Research vol. 11 (2001): 1725-1729

November 5, 2001
Presenter: Rich McEachin
Article: Debrah GuhaThakurta and Gary D. Stormo. "Identifying target sites for cooperatively binding factors." Bioinformatics vol. 17 (2001): 608-621

November 12, 2001
Presenter: Chad Creighton
Article: K.Y. Yeung, et. al. "Model-based clustering and data transformations for gene expression data." Bioinformatics vol. 17 (2001): 977-987

November 19, 2001
Presenter: Yunling Song
Article: Ingrid Hedenfalk, et. al. "Gene-Expression Profiles in Hereditary Breast Cancer." The New England Journal of Medicine vol. 344 (February 22, 2001): 539-548

November 26, 2001
Presenter: Dr. Dan Burns
Articles:

   1. Patrick Cramer, et. al. "Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution." Science vol. 292 (June 8, 2001): 1863-1876
   2. Averell L. Gnatt, et. al. "Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3Å Resolution." Science vol. 292 (June 8, 2001): 1876-1882

December 3, 2001
Presenter: Ron Liu
Article: Matthew E. Johnson, et. al. "Positive selection of a gene family during the emergence of humans and African apges." Nature vol. 413 (October 4, 2001): 514-519

December 10, 2001
Presenter: Marcin Adamski
Article: Kuang Lin, et. al. "Amino Acid Substitution Matrices from an Artificial Neural Network Model." Journal of Computational Biology vol. 8, (November 5, 2001): 471-481

December 17, 2001 - CANCELLED (Exams)

December 24, 2001 - CANCELLED (Christmas Eve)

December 31, 2001 - CANCELLED (New Years Eve)