Schedule

September 9, 2002
Presenter: Tom Blackwell
Article: Bent N. Terp, et. al. "Assessing the Relative Importance of the Biophysical Properties of Amino Acid Substitutions Associated With Human Genetic Disease." Human Mutation, v.20 n.2 (August 2002): 98-109.

September 16, 2002
Presenter: Rich McEachin
Article: Berthold Gottgens, et. al. "Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences." Genome Research, v. 11, n. 1, (2001): 87-97.

September 23, 2002
Presenter: Mark Benson
Article: Paul T Spellman and Gerald M Rubin, "Evidence for large domains of similarly expressed genes in the Drosophila genome." Journal of Biology, v.1, n.1, art. 5, (2002): 5.1-5.8

September 30, 2002
Presenter: Chad Creighton
Article: Carolina Perez-Iratxeta, Peer Bork and Miguel A. Andrade, "Association of genes to genetically inherited diseases using data mining." Nature Genetics, v.31 n.3, (July 2002): 316-319.

October 7, 2002
Presenter: Debra Williams
Article: Jay Shendure and George M. Church, "Computational discovery of sense-antisense transcription in the human and mouse genomes." Genome Biology, v.3, n.9, art.0044 (2002): 0044.1-0044.14.

October 14, 2002 - Cancelled: Fall Recess

October 21, 2002
Presenter: Dongxiao Zhu
Article: Lina A. Shehadeh, Larry S. Liebovitch and Victor K. Jirsa, "The structure of genetic networks determined from mRNA levels measured by cDNA microarray." NOT YET PUBLISHED - Paper copies are available outside Room 5443 Med Sci I.

October 28, 2002
Presenter: Carlos Santos
Article: Miguel A. Andrade and Alfonso Valencia, "Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families." Bioinformatics, v.14 n.14, (1998):600-607

November 4, 2002
Presenter: Damian Fermin
Article: Patrik Medstrand, Louie N. van de Lagemaat and Dixie L. Mager, "Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes" Genome Research, v.12, (2002):1483-1495

November 11, 2002
Presenter: Viktoriya Strumba
Article: Yu Zheng, Joseph D. Szustakowski, Lance Fortnow, Richard J. Roberts, and Simon Kasif, "Computational Identification of Operons in Microbial Genomes," Genome Research 12 (2002): 1221-1230

November 18, 2002
Presenter: Pete Ulintz
Article: Nitin S. Baliga, Min Pan, Young Ah Goo, Eugene C. Yi, David R. Goodlett, Krassen Dimitrov, Paul Shannon, Ruedi Aebersold, Wailap Victor Ng, and Leroy Hood, "Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach," PNAS 99 (2002): 14913-14918

November 25, 2002
Presenter: Jung Julie Kim
Article: Itai Yanai and Charles DeLisis, "The society of genes: networks of functional links between genes from comparative genomics," Genome Biology 3.11 (2002): research0064.1-0064.12

December 2, 2002
Presenter: Stewart Chang
Article: Neema Jamshidi, Sharon J. Wiback and Bernhard O. Palsson, "In silico model driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism," Genome Research 12.11 (2002): 1687-1692

December 9, 2002
Presenter: Tom Blackwell
Article: Gane Ka-Shu Wong, Jun Wang, Lin Tao, Jun Tan, JianGuo Zhang, Douglas A. Passey, and Jun Yu, "Compositional Gradients in Gramineae Genes," Genome Research 12.6 (2002): 851-856