Schedule

Septemeber 8, 2003
Presenter: Tom Blackwell, Ph.D.
Artice: Rogier Versteeg, Barbera D.C. van Schaik, Marinus F. van Batenburg,
Marco Roos, Ramin Monajemi, Huib Caron, Harmen J. Bussemaker and
Antoine H.C. van Kampen.
"The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes."
Genome Research, v.13 (Epub before print) Aug 12, 2003

September 15, 2003
Presenter: Pete Ulintz
Article: Shailesh V. Date and Edward M. Marcotte
"Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages."
Nature Biotechnology, v.21 n.9 pp. 1055-1062, (September 2003)

September 22, 2003
Presenter: Viktoriya Strumba
Article: Silvio Bicciato, Mario Pandin, Giuseppe Didone, Carlo di Bello.
"Pattern identification and classification in gene expression data using an autoassociative neural network model."
Biotechnology and Bioengineering, v.81 n.5 pp.594-606 (March 5, 2003)

Septebmer 29, 2003
Presenter: Dongxiao Zhu
Article: Hongyi Zhou and Yaoqi Zhou.
"Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden Markov model based method."
Protein Science, v.12 n.7 pp.1547-1555 (July, 2003)

October 6, 2003
Presenter: Jung Hei (Julie) Kim
Article: Lev A Soinov, Maria A Krestyaninova and Alvis Brazma.
"Towards reconstruction of gene networks from expression data by supervised learning."
Genome Biology, v. 4 art. R6 (January 6, 2003)

October 20, 2003
Presenter: Dan Rhodes
Article: Justin Lamb, Sridhar Ramaswamy, Heide L. Ford, Bernardo Contreras, Robert V. Martinez, Frances S. Kitttrell, Cynthia A. Zahnow, Nick Patterson, Todd R. Golub, and Mark E. Ewen.
"A Mechanism of Cyclin D1 Action Encoded in the Patterns of Gene Expression in Human Cancer."
Cell, v. 114 pp. 323-334 (August 8, 2003)

October 27, 2003
Presenter: Mark Benson
Article: Elena Rivas and Sean Eddy.
"Noncoding RNA gene detection using comparative sequence analysis."
BMC Bioinformatics, v. 2, n. 8 (October 10, 2001)

November 3, 2003
Presenter: Carlos Santos
Article: Asako Koike, Yoshiyuki Kobayashi, and Toshihisa Takagi.
"Kinase Pathway Database: An Integrated Protein-Kinase and NLP-Based Protein-Interaction Resource."
Genome Research, 13:1231-1243 (2003)

November 10, 2003
Presenter: Abhik Shah
Article: Ronald Jansen, Haiyuan Yu, Dov Greenbaum, Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein.
"A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data."
Science, 302:449-453 (17 October 2003)

November 17, 2003
Presenter: Jin Li
Article: Michael B. Eisen, Paul T. Spellman, Patrick O. Brown and David Botstein.
"Cluster analysis and display of genome wide expression patterns."
PNAS, 95.24:14863-14868 (December, 1998)

November 24, 2003
Presenter: Yili Chen
Article: Ran Elkon, Chaim Linhart, Roded Sharan, Ron Shamir and Yosef Shiloh.
"Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells."
Genome Research, 13:773-780 (2003)

December 1, 2003
Presenter: Stewart Chang
Article: Ethan Lee, Adrian Salic, Roland Kruger, Reinhard Heinrich, and Marc W. Kirschner.
"The Roles of APC and Axin Derived from Experimental and Theoretical Analysis of the Wnt Pathway."
PLoS Biology, 1:1:116-132 (October 2003)

December 8, 2003
Presenter: Xing Li
Article: Ling Qin, Ping Qiu, Luquan Wang, Xin Li, John T. Swarthout, Patricia Soteropoulos, Peter Tolias and Nicola C. Patridge.
"Gene Expression Profiles and Transcription Factors Involved in Parathyroid Hormone Signaling in Osteoblasts Revealed by Microarray and Bioinformatics."
Journal of Biological Chemistry, 278.22:19723-19731 (May 30, 2003)