Schedule

January 7, 2002
Presenter: Tom Blackwell
Article: Karl J. Fryxell and Emile Zuckerkandl. "Cytosine Deamination Plays a Primary Role in the Evolution of Mammalian Isochores." Molecular Biology and Evolution vol. 17, (2000): 1371-1383

Please note that the meetings are now held on Thursdays from 1 PM to 2 PM in 5631 Med Sci II. (Bioinformatics Computer Lab)

January 17, 2002
Presenter: Stewart Chang
Article: Anuj Kumar, et. al. "An integrated approach for finding overlooked genes in yeast." Nature Biotechnology vol. 20, (January 2002): 58-63

January 24, 2002
Presenter: Ron Liu
Article: Anne-Claude Gavin, et. al. "Functional organization of the yeast proteome by systematic analysis of protein complexes." Nature vol. 415, (January 10, 2002): 141-147

January 31, 2002
Presenter: Rich McEachin Tom Blackwell
Article: T. Tsunoda and T. Takagi. "Estimating transcription factor bindability on DNA." Bioinfomatics vol. 15, (1999): 622-630

February 7, 2002
Presenter: Yuri Ikeda Carlos Santos
Articles:

   1. Michele Markstein, et. al. "Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo." PNAS vol. 99, (January 22, 2002): 763-768
   2. Benjamin P. Berman, et. al. "Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome." PNAS vol. 99, (January 22, 2002): 757-762

February 14, 2002
Presenter: Yongjia Wang
Article: Baris E. Suzek, et. al. "A probabilistic method for identifying start condons in bacterial genomes." Bioinformatics vol. 17, (2001): 1123-1130

February 21, 2002
Presenter: Jianjun Yu Rich McEachin
Article: Yitzhak Pilpel, Priya Sudarsanam and George Church. "Identifying regulatory networks by combinatorial analysis of promoter elements." Nature Genetics vol.29, (2001): 153-159

February 28, 2002 - CANCELLED (Spring Break)

March 7, 2002
Presenter: Yili Chen
Article: Andreas Wagner. "How to reconstruct a large genetic network from n gene perturbations in fewer than n² easy steps." Bioinformatics vol. 17, (2001): 1183-1197

March 14, 2002
Presenter: Xing Li
Article:

March 21, 2002
Presenter: Carlos Santos Yuri Ikeda
Article: Dirk Walther, Gabor Bartha, and Macdonald Morris. "Basecall with LifeTrace." Genome Research vol. 11, (2001): 875-888

March 28, 2002
Presenter: Jianjun Yu
Article: Katsuhisa Horimoto, and Hiroyuki Toh. "Statistical estimation of cluster boundaries in gene expression profile data." Bioinformatics vol. 17, (2001): 1143-1151

April 4, 2002
Presenter: Chad Creighton
Article: Ilya Shmulevich, et. al. "Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks." Bioinformatics vol. 18, (2002): 261-274

April 11, 2002
Presenter:
Article:

April 18, 2002 - CANCELLED (Exams)