Schedule

January 9, 2003
Presenter: Yili Chen
Article: J. Freudenberg and P. Propping, "A similarity-based method for genome-wide prediction of disease-relevant human genes," Bioinformatics, v. 18 suppl. 2 (2002): S110–S115.

January 13, 2003
Presenter: Carlos Santos
Article: J. Pustejovsky, J. Castano, J. Zhang, M. Kotecki, B. Cochran, "Robust relational parsing over Biomedical literature: extracting inhibit relations." Pacific Symposium on Biocomputing, conference proceedings, year 2001, no volume number, no page numbers.

January 20, 2003 - Cancelled (MLK Holiday)

January 27, 2003
Presenter: Mark Benson
Article: Richard Bonneau, Charlie E. M. Strauss, Carol A. Rohl, Dylan Chivian, Phillip Bradley, Lars Malmstrom, Tim Robertson and David Bakerm, "De Novo Prediction of Three-dimensional Structures for Major Protein Families," J. Mol. Biol., v. 322 n.1 (2002): 65–78

February 3, 2003
Presenter: Damian Fermin
Article: Soumya Raychaudhuri, Hinrich Schutze, and Russ B. Altman, "Using Text Analysis to Identify Functionally Coherent Gene Groups," Genome Research v. 12 (2002): 1582–1590

February 10, 2003
Prsenter: Stewart Chang
Article: Michal Ronen, Revital Rosenberg, Boris I. Shraiman, and Uri Alon, "Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics," PNAS v. 99 n. 16 (2002): 10555-10560

February 17, 2003
Presenter: Chad Creighton
Article: Tong Ihn Lee et al., "Transcriptional Regulatory Networks in Saccharomyces cerevisiae," Science v. 298 (2002): 799-804

February 24, 2003 - Cancelled (Winter Recess)

March 3, 2003
Presenter: Dan Burns, Ph.D.
Article: Anuj Kumar, et al., "Subcellular localization of the yeast proteome," Genes & Development v. 16 (2002): 707-719

March 10, 2003
Presenter: Ji Chen
Article: Hunter B. Fraser, Aaron E. Hirsh, Lars M. Steinmetz, Curt Scharfe and Marcus W. Feldman, "Evolutionary rate in the protein interaction network," Science v. 296 n. 5568 (2002): 750-752

March 17, 2003
Presenter: Xing Li
Article: B.M. Bolstad, R.A. Irizarry, M. Astrand, T.P. Speed, "A comparison of normialization methods for high density oligonucleotide array data based on variance and bias," Bioinformatics v.19 n.2 (2002): 185-193

March 24, 2003
Presenter: Yu Chen
Article: Parag Mallick, Robert Weiss, and David Eisenberg, "The directional atomic solvation energy: An atom-based potential for the assignment of protein sequences to known folds" PNAS v.99 n.25 (2002): 16041-16046

March 31, 2003
Presenter: Special Guest Speaker

April 7, 2003
Presenter: Ed Barbour
Article: Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett and Russ B. Altman, "Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models," Bioinformatics v.18 suppl.1 (2002): S207-S215

April 14, 2003
Presenter: Yongjia Wang
Article: William G. Fairbrother, Ru-Fang yeh, Phillip A. Sharp, Christopher B. Burge, "Predictive Identification of Exonic Splicing Enhancers in Human Genes," Science v. 297 (2002): 1007-1013